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从TCGA里面找免疫组库的数据-需要下载TCGA原始数据的权限

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发表于 2017-3-4 23:49:33 | 显示全部楼层 |阅读模式
免疫组库分析是我比较熟悉的啦,我也自己建立过全套分析流程和报告系统!
概念很简单,我就不讲了,给一张图吧:


这里居然看到了TCGA的这个分析:Profiling tissue-resident T cell repertoires by RNA sequencing
http://genomemedicine.biomedcent ... 6/s13073-015-0248-x

作者取得了下载TCGA数据的权限:
All available RNA-seq fastq files for solid tumors and matched normal tissues were downloaded with permission from Cancer Genomics Hub (https://cghub.ucsc.edu/).

数据量不少呀~~~服务器不够的朋友,就不用想了;
This included 8655 samples from 24 tumor sites. The majority (79 %) of this TCGA RNA-seq data are 50-nucleotide reads, while 21 % are 76 nucleotides, with sequencing depths ranging from 5.27 × 10-6 to 4.51 × 10-8 reads.
重点就是分析 CDR3 sequences


你这个问题很复杂,需要打赏,请点击 http://www.bio-info-trainee.com/donate 进行打赏,谢谢
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