搜索
查看: 2800|回复: 0

把TCGA的一个癌种的6种数据做出一个数据库

[复制链接]

633

主题

1182

帖子

4030

积分

管理员

Rank: 9Rank: 9Rank: 9

积分
4030
发表于 2017-3-5 11:45:19 | 显示全部楼层 |阅读模式
虽然我个人认为这个数据库没有半毛钱意义,但是能做出来,至少说明作者搞懂了那么多数据的含义吧。
文章在:http://journals.plos.org/plosone ... ournal.pone.0142591
题目是;DBGC: A Database of Human Gastric Cancer
不用说啦,肯定是中国人灌水的咯,Shanghai Ruijin Hospital 的人,可能对他们医院来说,会有一点点意义吧,快速搜索定位一些数据咯。

数据库网站使用方法;


流程如下:


数据库整合的数据包括:


把TCGA的数据重新整合,并且注释到了一些其它的公共数据库。
Molecular biological data were extracted and curated from online resources. Transcriptomics data were collected from the GEO database (http://www.ncbi.nlm.nih.gov/geo/) and EBI database (http://www.ebi.ac.uk/). Proteomics data were extracted from the published literature through manual reading and standardization [16, 17]. Mutation data were collected from the dbVar database (http://www.ncbi.nlm.nih.gov/dbvar/), OMIM database (http://www.ncbi.nlm.nih.gov/omim/), HGMD database (http://www.hgmd.org/), and published literature [18, 19]. All biomarker data were extracted from published literature [20, 21]. Drug-related genes were extracted from the PharmGKB database (http://www.pharmgkb.org/), CancerDR database (http://crdd.osdd.net/raghava/cancerdr/) and published literature
你这个问题很复杂,需要打赏,请点击 http://www.bio-info-trainee.com/donate 进行打赏,谢谢
回复

使用道具 举报

您需要登录后才可以回帖 登录 | 立即注册

本版积分规则

QQ|手机版|小黑屋|生信技能树 ( 粤ICP备15016384号  

GMT+8, 2019-11-12 10:14 , Processed in 0.027504 second(s), 25 queries .

Powered by Discuz! X3.2

© 2001-2013 Comsenz Inc.