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生信人必须了解的常见ftp资源中心

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发表于 2016-9-6 07:20:50 | 显示全部楼层 |阅读模式

很多人可能并不重视这一块知识点,但我个人觉得这些FTP资源中心是非常有益的学习资源,对它们的了解程度从某种意义上来讲,是对生物信息这个领域的掌握程度,我会持续不断的更新该帖子,以及对它们的学习总结:
生信人必学ftp站点之1000genomes
生信人必学ftp站点之NCBI-GEO

其余站点如下,希望大家可以跟着我一起学习!!!

ftp://ftp-trace.ncbi.nih.gov/geo/
ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/
ftp://ftp-trace.ncbi.nih.gov/epigenomics/
ftp://ftp-trace.ncbi.nih.gov/gene/DATA/
ftp://ftp-trace.ncbi.nih.gov/refseq/
ftp://ftp-trace.ncbi.nih.gov/hapmap/
ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/
ftp://ftp-trace.ncbi.nih.gov/snp/organisms/
ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/
ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/10XGenomics/README_10Xgenomes.txt

ftp://ftp.ensembl.org/pub/release-75/
ftp://ftp.ensembl.org/pub/grch37/release-76/
ftp://ftp.ensembl.org/pub/data_files/homo_sapiens/GRCh37/
ftp://ftp.ensembl.org/pub/pre/

http://hgdownload.cse.ucsc.edu/downloads.html
http://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/
http://hgdownload.cse.ucsc.edu/goldenpath/hg19/bigZips/
http://hgdownload.cse.ucsc.edu/goldenpath/hg19/encodeDCC/
http://hgdownload.cse.ucsc.edu/goldenpath/hg19/liftOver/
http://hgdownload.cse.ucsc.edu/goldenpath/hg19/chromosomes/
http://genome.ucsc.edu/ENCODE/downloads.html

ftp://ftp.sanger.ac.uk/pub/1000genomes/
ftp://ftp.sanger.ac.uk/pub/encode/
ftp://ftp.sanger.ac.uk/pub/gencode/
ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/
ftp://ftp.sanger.ac.uk/pub/seminars/
ftp://ftp.sanger.ac.uk/pub/sequences/
ftp://ftp.sanger.ac.uk/pub/cancer/AlexandrovEtAl/mutational_catalogs/

ftp://ftp.broadinstitute.org/pub/ExAC_release/
ftp://ftp.broadinstitute.org/pub/HapMap3/
ftp://ftp.broad.mit.edu/pub/genepattern/
ftp://ftp.broadinstitute.org/outgoing/jjaffe/LINCS/
https://personal.broadinstitute.org/anshul/projects/
https://gdac.broadinstitute.org/

ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data/
ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/
ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000_genomes_project/data
ftp://ftp.sra.ebi.ac.uk/vol1/ERA012/ERA012008/sff
ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR741/SRR741411
ftp://ftp.ebi.ac.uk/pub/databases/blueprint/
ftp://ftp.ebi.ac.uk/pub/databases/1000genomes/
ftp://ftp.ebi.ac.uk/pub/databases/uniprot/
ftp://ftp.ebi.ac.uk/pub/databases/wormbase/
ftp://ftp.ebi.ac.uk/pub/databases/yeast/
ftp://ftp.ebi.ac.uk/pub/training/



http://www.ftp-sites.org/anonymous_ftp_sites_list_edu_1.html
ftp://ftp.wormbase.org/pub/wormbase/
https://www.genome.gov/pages/research/der/ichg-1000genomestutorial/how_to_access_the_data.pdf

http://www.nygenome.org/wp-content/uploads/2015/10/NYGC-Services-Catalogue-July-20-2015-No-Pricing.pdf


http://ihec-epigenomes.org/research/projects/
ftp://ftp.ebi.ac.uk/pub/databases/ihec/
http://epigenomesportal.ca/public_data/
https://dcc.icgc.org/  ftp://data.dcc.icgc.org/
http://www.cbioportal.org/
http://cancer.sanger.ac.uk/cosmic
GRCh37.75.cdna.all.fa.gz wget ftp://ftp.ensembl.org/pub/release-75/fasta/homo_sapiens/ncrna/
http://www.broadinstitute.org/ccle/home
http://cancer.sanger.ac.uk/cancergenome/projects/cell_lines/
http://www.broadinstitute.org/achilles
http://lincsportal.ccs.miami.edu/dcic-portal/





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