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你真正了解小鼠基因组吗?Mus musculus GRCm38.p5

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发表于 2017-5-24 15:28:22 | 显示全部楼层 |阅读模式
本帖最后由 ydchen 于 2017-5-24 15:29 编辑

NCBI的这个网站可以查主流物种的基因组信息:https://www.ncbi.nlm.nih.gov/genome?term=mus%20musculus

包括序列下载:
Mus musculus (house mouse)
Reference genome:
Download sequences in FASTA format for genome, transcript, protein

Download genome annotation in GFF, GenBank or tabular format

BLAST against Mus musculus genome, transcript, protein

All 22 genomes for species:
Browse the list

Download sequence and annotation from RefSeq or GenBank


包括各个染色体信息:

Loc
Type
Name
RefSeq
INSDC
Size (Mb)
GC%
Protein
rRNA
tRNA
Other RNA
Gene
Pseudogene
Nuc
Chr
1
195.47
41.3
-
37
2,031
2,687
579
Nuc
Chr
2
182.11
42.2
-
8
2,783
3,491
609
Nuc
Chr
3
160.04
40.7
-
40
1,663
2,225
480
Nuc
Chr
4
156.51
42.5
-
8
1,991
2,622
497
Nuc
Chr
5
151.84
42.7
-
10
1,952
2,507
413
Nuc
Chr
6
149.74
41.6
1
53
1,572
2,597
555
Nuc
Chr
7
145.44
43.2
-
10
2,087
3,798
935
Nuc
Chr
8
129.4
42.6
32
7
1,673
2,177
376
Nuc
Chr
9
124.6
42.9
-
7
1,698
2,276
374
Nuc
Chr
10
130.7
41.6
-
11
1,546
2,086
391
Nuc
Chr
11
122.08
44.0
-
47
2,097
2,852
381
Nuc
Chr
12
120.13
42.0
-
3
1,593
2,002
516
Nuc
Chr
13
120.42
41.9
-
105
1,513
2,127
476
Nuc
Chr
14
124.9
41.4
-
12
1,538
2,111
455
Nuc
Chr
15
104.04
42.2
-
4
1,349
1,620
282
Nuc
Chr
16
98.21
41.2
-
2
1,081
1,367
257
Nuc
Chr
17
94.99
42.9
-
12
1,373
2,005
427
Nuc
Chr
18
90.7
41.7
-
-
966
1,218
264
Nuc
Chr
19
61.43
43.1
-
10
831
1,283
205
Nuc
Chr
X
171.03
39.7
-
17
933
2,291
912
Nuc
Chr
Y
91.74
39.3
-
-
119
423
85
MT
Chr
MT
0.016299
36.7
2
22
-
37
-
Un
-
-
82.18
43.7
-
10
1,087
2,707
479





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