miRNA target prediction网站合集

Jimmy

The putative targets of integrated-signature miRNAs were predicted using databases utilizing three different target prediction algorithms: TargetScan v6.2 (http://www.targetscan.org/),
RNA22 (https://cm.jefferson.edu/rna22v2/),
miRDB (http://www.mirdb.org/miRDB/),
RNAhybrid (http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/) and
DIANA-microT-CDS Web Server v5.0 (http://diana.imis.athena-innovat ... ?r=microT_CDS/index).
DIANA algorithm predictions were performed using miTG score threshold 0.7 (strict setting).
Only genes with target sites in 3′UTR were used.

Validated targets were acquired from
TarBase v6.0 database (http://diana.imis.athena-innovat ... php?r=tarbase/index) and
miRwalk (http://www.umm.uni-heidelberg.de ... mirnatargetpub.html).

Consensus targets were then defined as genes predicted by at least 4 algorithms plus validated targets from TarBase and starBase.

chenlijuan_009

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yojoy123

干货~
感谢分享~

渊梦无痕

补充几个  1.http://pictar.mdc-berlin.de/
              2. mirgator.kobic.re.kr/help.html
              3.www.isical.ac.in/~bioinfo_miu/targetminer20.htm
              4.www.mircode.org

jasonxu

我也来补充一个http://www.microrna.org/microrna/home.do