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蛋白质相互作用数据库大全

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发表于 2016-11-29 11:00:54 | 显示全部楼层 |阅读模式
本帖最后由 ydchen 于 2016-11-29 11:02 编辑

2015年总结的,应该很全了:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4466863/
[size=15.9991px]Agile Protein Interaction DataAnalyzer (APID) [[size=15.9991px]59[size=15.9991px]], BioGrid [[size=15.9991px]10[size=15.9991px]], ConsensusPathDB (CPDB) [[size=15.9991px]60[size=15.9991px]], IntAct - Molecular Interaction Database [[size=15.9991px]21[size=15.9991px], [size=15.9991px]61[size=15.9991px]], Interologous Interaction Database (I2D) [[size=15.9991px]62[size=15.9991px]], Mentha - The Interactome Browser [[size=15.9991px]63[size=15.9991px]], Molecular INTeraction database (MINT) [[size=15.9991px]64[size=15.9991px]], or more specific its’ separate annotation of human PPIs called HomoMINT [[size=15.9991px]65[size=15.9991px]], Protein Interaction Network Visualizer (PINV) [[size=15.9991px]23[size=15.9991px]], StringDB - Search Tool for the Retrieval of Interacting Genes/Proteins [[size=15.9991px]66[size=15.9991px]] and Unified Human Interactome (UniHI) [[size=15.9991px]67[size=15.9991px]].
[size=15.9991px]

[size=15.9991px]还有:http://journals.plos.org/plosone ... ournal.pone.0031826
Interactions were retrieved from the following public databases: BioGRID (version 2.0.62; release date: March 16, 2010) [4], DIP (release date: December 30, 2009) [5], HPRD (version 8; release date: July 6, 2009) [6], IntAct (release date: March 29, 2010) [7], MINT (release date: 9 November 2009) [8], BIND (2004 release [11]), and MIPS (published: November 5, 2004) [10]. Genetic interactions were removed from BioGRID. Additionally, we integrated interactions from manually selected studies [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22]; interactions from these studies were integrated that were not contained in the public databases at the time of integrating the sources.
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发表于 2016-12-3 13:53:18 | 显示全部楼层
能稍微整理一下么?让条理更清晰一点,排版更好看点!
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发表于 2017-1-24 18:13:50 | 显示全部楼层
你好,您之前有用过stringdb这个R包吗?对输入文件有什么要求吗?我这边运行的时候总是在输入文件读取报错!谢谢!
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