搜索
查看: 2221|回复: 1

[experiment] GSE62944-所有TCGA收集的mRNA表达数据集数据集

[复制链接]

633

主题

1182

帖子

4030

积分

管理员

Rank: 9Rank: 9Rank: 9

积分
4030
发表于 2017-2-22 16:31:44 | 显示全部楼层 |阅读模式
是的,你没有看错,一个GSE study也可以当做bioconductor包!
http://bioconductor.org/packages ... /html/GSE62944.html
就是把一堆数据存储在bioconductor包里,可以直接加载成R里面的对象!
TCGA RNA-Seq data, GEO accession GSE62944, available as an ExpressionSet object

当然,原始表达矩阵也可以下载,见我博客:http://www.bio-info-trainee.com/1274.html

We reprocessed RNA-Seq data for 9264 tumor samples and 741 normal samples across 24 cancer types from The Cancer Genome Atlas with "Rsubread". Rsubread is an open source R package that has shown high concordance with other existing methods of alignment and summarization, but is simple to use and takes significantly less time to process data. Additionally, we provide clinical variables publicly available as of May 20, 2015 for the tumor samples where the TCGA ids are matched.
你这个问题很复杂,需要打赏,请点击 http://www.bio-info-trainee.com/donate 进行打赏,谢谢
回复

使用道具 举报

13

主题

33

帖子

243

积分

版主

Rank: 7Rank: 7Rank: 7

积分
243
发表于 2017-3-17 12:30:56 | 显示全部楼层
厉害,点赞!!!
回复

使用道具 举报

您需要登录后才可以回帖 登录 | 立即注册

本版积分规则

QQ|手机版|小黑屋|生信技能树 ( 粤ICP备15016384号  

GMT+8, 2019-11-21 23:04 , Processed in 0.034064 second(s), 22 queries .

Powered by Discuz! X3.2

© 2001-2013 Comsenz Inc.