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管理员
cd ~
pwd
ls ls -l ls -al
mkdir software
cd software pwd
touch abc.txt ls
mv abc.txt xyz.py ls
touch example.txt echo "this is a test" > example.txt more example.txt
mv example.txt example more example
echo "this" > example
echo "this is a test" >> example more
rm *
curl -O http://www.bioinformatics.babrah ... /fastqc_v0.11.5.zip
unzip fastqc_v0.11.5.zip
java -version
cd FastQC/ ls -l
chmod +x fastqc
echo export PATH=$PATH:~/software/FastQC >> ~/.profile source ~/.profilefastqc -h
echo export PATH=$PATH:~/software/FastQC >> ~/.bashrc source ~/.bashrcfastqc -h
mkdir -p ~/bin
ln -s ~/software/FastQC/fastqc ~/bin/fastqc
echo 'export PATH=~/binPATH' >> ~/.profile
source ~/.profile fastqc -h
echo 'export PATH=~/binPATH' >> ~/.bashrc source ~/.bashrc fastqc -h
mkdir seq
fastqc SRR1553610_1.fastq
fastqc *.fastq
curl -O http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip unzip Trimmomatic-0.36.zip cd Trimmomatic-0.36
echo '#!/bin/bash' > ~/bin/trimmomatic echo 'java -jar ~/software/Trimmomatic-0.36/trimmomatic-0.36.jar $@' >> ~/bin/trimmomatic chmod +x ~/bin/trimmomatic trimmomatic
vi ~/bin/trimmomatic
chmod +x ~/bin/trimmomatic trimmomatic
echo "alias trimmomatic='java -jar ~/software/Trimmomatic-0.36/trimmomatic-0.36.jar'" >> ~/.bashrc source ~/.bashrc
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